Elnitski L., Piontkivska H., Welch L.R. (Eds.) Advances in Genomic Sequence Analysis and Pattern Discovery

World Scientific, 2011. — 223 p. — ISBN: 9814327727, 978-9814327725.
Series: Science, Engineering, and Biology Informatics (Book 7).Mapping the genomic landscapes is one of the most exciting frontiers of science. We have the opportunity to reverse engineer the blueprints and the control systems of living organisms. Computational tools are key enablers in the deciphering process. This book provides an in-depth presentation of some of the important computational biology approaches to genomic sequence analysis. The first section of the book discusses methods for discovering patterns in DNA and RNA. This is followed by the second section that reflects on methods in various ways, including performance, usage and paradigms.Pattern Discovery Methods.
Large-Scale Gene Regulatory Motif Discovery with NestedMICA.
R’MES: A Tool to Find Motifs with a Significantly Unexpected Frequency in Biological Sequences.
An Intricate Mosaic of Genomic Patterns at Mid-range Scale.
Motif Finding from Chips to ChIPs.
A New Approach to the Discovery of RNA Structural Elements in the Human Genome.
Performance and Paradigms.
Benchmarking of Methods for Motif Discovery in DNA.
Encyclopedias of DNA Elements for Plant Genomes.
Manycore High-Performance Computing in Bioinformatics.
Natural Selection and the Genome.